We are migrating to the new CASAVA to do basecalling and generate fastqs for an Illumina sequencing run (both GA-II and Hiseq). When demultiplexing through CASAVA, the read headers include the indexed barcode. Is there an option to get this to happen for non-demultiplexed lanes? We are interested in bar code binning outside of CASAVA and seeing the barcode.
Last edited by ians; Today at 01:40 PM.
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